It has been observed in practice that applying pruning-at-initialization methods to neural networks and training the sparsified networks can not only retain the testing performance of the original dense models, but also sometimes even slightly boost the generalization performance. Theoretical understanding for such experimental observations are yet to be developed. This work makes the first attempt to study how different pruning fractions affect the model's gradient descent dynamics and generalization. Specifically, this work considers a classification task for overparameterized two-layer neural networks, where the network is randomly pruned according to different rates at the initialization. It is shown that as long as the pruning fraction is below a certain threshold, gradient descent can drive the training loss toward zero and the network exhibits good generalization performance. More surprisingly, the generalization bound gets better as the pruning fraction gets larger. To complement this positive result, this work further shows a negative result: there exists a large pruning fraction such that while gradient descent is still able to drive the training loss toward zero (by memorizing noise), the generalization performance is no better than random guessing. This further suggests that pruning can change the feature learning process, which leads to the performance drop of the pruned neural network. Up to our knowledge, this is the \textbf{first} generalization result for pruned neural networks, suggesting that pruning can improve the neural network's generalization.

The number of international benchmarking competitions is steadily increasing in various fields of machine learning (ML) research and practice. So far, however, little is known about the common practice as well as bottlenecks faced by the community in tackling the research questions posed. To shed light on the status quo of algorithm development in the specific field of biomedical imaging analysis, we designed an international survey that was issued to all participants of challenges conducted in conjunction with the IEEE ISBI 2021 and MICCAI 2021 conferences (80 competitions in total). The survey covered participants' expertise and working environments, their chosen strategies, as well as algorithm characteristics. A median of 72% challenge participants took part in the survey. According to our results, knowledge exchange was the primary incentive (70%) for participation, while the reception of prize money played only a minor role (16%). While a median of 80 working hours was spent on method development, a large portion of participants stated that they did not have enough time for method development (32%). 25% perceived the infrastructure to be a bottleneck. Overall, 94% of all solutions were deep learning-based. Of these, 84% were based on standard architectures. 43% of the respondents reported that the data samples (e.g., images) were too large to be processed at once. This was most commonly addressed by patch-based training (69%), downsampling (37%), and solving 3D analysis tasks as a series of 2D tasks. K-fold cross-validation on the training set was performed by only 37% of the participants and only 50% of the participants performed ensembling based on multiple identical models (61%) or heterogeneous models (39%). 48% of the respondents applied postprocessing steps.

Active galactic nuclei (AGN) are supermassive black holes with luminous accretion disks found in some galaxies, and are thought to play an important role in galaxy evolution. However, traditional optical spectroscopy for identifying AGN requires time-intensive observations. We train a convolutional neural network (CNN) to distinguish AGN host galaxies from non-active galaxies using a sample of 210,000 Sloan Digital Sky Survey galaxies. We evaluate the CNN on 33,000 galaxies that are spectrally classified as composites, and find correlations between galaxy appearances and their CNN classifications, which hint at evolutionary processes that affect both galaxy morphology and AGN activity. With the advent of the Vera C. Rubin Observatory, Nancy Grace Roman Space Telescope, and other wide-field imaging telescopes, deep learning methods will be instrumental for quickly and reliably shortlisting AGN samples for future analyses.

The combination of transformers and masked image modeling (MIM) pre-training framework has shown great potential in various vision tasks. However, the pre-training computational budget is too heavy and withholds the MIM from becoming a practical training paradigm. This paper presents FastMIM, a simple and generic framework for expediting masked image modeling with the following two steps: (i) pre-training vision backbones with low-resolution input images; and (ii) reconstructing Histograms of Oriented Gradients (HOG) feature instead of original RGB values of the input images. In addition, we propose FastMIM-P to progressively enlarge the input resolution during pre-training stage to further enhance the transfer results of models with high capacity. We point out that: (i) a wide range of input resolutions in pre-training phase can lead to similar performances in fine-tuning phase and downstream tasks such as detection and segmentation; (ii) the shallow layers of encoder are more important during pre-training and discarding last several layers can speed up the training stage with no harm to fine-tuning performance; (iii) the decoder should match the size of selected network; and (iv) HOG is more stable than RGB values when resolution transfers;. Equipped with FastMIM, all kinds of vision backbones can be pre-trained in an efficient way. For example, we can achieve 83.8%/84.1% top-1 accuracy on ImageNet-1K with ViT-B/Swin-B as backbones. Compared to previous relevant approaches, we can achieve comparable or better top-1 accuracy while accelerate the training procedure by $\sim$5$\times$. Code can be found in https://github.com/ggjy/FastMIM.pytorch.

Recently, the success of pre-training in text domain has been fully extended to vision, audio, and cross-modal scenarios. The proposed pre-training models of different modalities are showing a rising trend of homogeneity in their model structures, which brings the opportunity to implement different pre-training models within a uniform framework. In this paper, we present TencentPretrain, a toolkit supporting pre-training models of different modalities. The core feature of TencentPretrain is the modular design. The toolkit uniformly divides pre-training models into 5 components: embedding, encoder, target embedding, decoder, and target. As almost all of common modules are provided in each component, users can choose the desired modules from different components to build a complete pre-training model. The modular design enables users to efficiently reproduce existing pre-training models or build brand-new one. We test the toolkit on text, vision, and audio benchmarks and show that it can match the performance of the original implementations.

Physics-Informed Neural Networks (PINNs) have recently been proposed to solve scientific and engineering problems, where physical laws are introduced into neural networks as prior knowledge. With the embedded physical laws, PINNs enable the estimation of critical parameters, which are unobservable via physical tools, through observable variables. For example, Power Electronic Converters (PECs) are essential building blocks for the green energy transition. PINNs have been applied to estimate the capacitance, which is unobservable during PEC operations, using current and voltage, which can be observed easily during operations. The estimated capacitance facilitates self-diagnostics of PECs. Existing PINNs are often manually designed, which is time-consuming and may lead to suboptimal performance due to a large number of design choices for neural network architectures and hyperparameters. In addition, PINNs are often deployed on different physical devices, e.g., PECs, with limited and varying resources. Therefore, it requires designing different PINN models under different resource constraints, making it an even more challenging task for manual design. To contend with the challenges, we propose Automated Physics-Informed Neural Networks (AutoPINN), a framework that enables the automated design of PINNs by combining AutoML and PINNs. Specifically, we first tailor a search space that allows finding high-accuracy PINNs for PEC internal parameter estimation. We then propose a resource-aware search strategy to explore the search space to find the best PINN model under different resource constraints. We experimentally demonstrate that AutoPINN is able to find more accurate PINN models than human-designed, state-of-the-art PINN models using fewer resources.

Zero-shot cross-lingual named entity recognition (NER) aims at transferring knowledge from annotated and rich-resource data in source languages to unlabeled and lean-resource data in target languages. Existing mainstream methods based on the teacher-student distillation framework ignore the rich and complementary information lying in the intermediate layers of pre-trained language models, and domain-invariant information is easily lost during transfer. In this study, a mixture of short-channel distillers (MSD) method is proposed to fully interact the rich hierarchical information in the teacher model and to transfer knowledge to the student model sufficiently and efficiently. Concretely, a multi-channel distillation framework is designed for sufficient information transfer by aggregating multiple distillers as a mixture. Besides, an unsupervised method adopting parallel domain adaptation is proposed to shorten the channels between the teacher and student models to preserve domain-invariant features. Experiments on four datasets across nine languages demonstrate that the proposed method achieves new state-of-the-art performance on zero-shot cross-lingual NER and shows great generalization and compatibility across languages and fields.

Objective: We aim to develop an open-source natural language processing (NLP) package, SODA (i.e., SOcial DeterminAnts), with pre-trained transformer models to extract social determinants of health (SDoH) for cancer patients, examine the generalizability of SODA to a new disease domain (i.e., opioid use), and evaluate the extraction rate of SDoH using cancer populations. Methods: We identified SDoH categories and attributes and developed an SDoH corpus using clinical notes from a general cancer cohort. We compared four transformer-based NLP models to extract SDoH, examined the generalizability of NLP models to a cohort of patients prescribed with opioids, and explored customization strategies to improve performance. We applied the best NLP model to extract 19 categories of SDoH from the breast (n=7,971), lung (n=11,804), and colorectal cancer (n=6,240) cohorts. Results and Conclusion: We developed a corpus of 629 cancer patients notes with annotations of 13,193 SDoH concepts/attributes from 19 categories of SDoH. The Bidirectional Encoder Representations from Transformers (BERT) model achieved the best strict/lenient F1 scores of 0.9216 and 0.9441 for SDoH concept extraction, 0.9617 and 0.9626 for linking attributes to SDoH concepts. Fine-tuning the NLP models using new annotations from opioid use patients improved the strict/lenient F1 scores from 0.8172/0.8502 to 0.8312/0.8679. The extraction rates among 19 categories of SDoH varied greatly, where 10 SDoH could be extracted from >70% of cancer patients, but 9 SDoH had a low extraction rate (<70% of cancer patients). The SODA package with pre-trained transformer models is publicly available at https://github.com/uf-hobiinformatics-lab/SDoH_SODA.

Reinforcement learning often suffer from the sparse reward issue in real-world robotics problems. Learning from demonstration (LfD) is an effective way to eliminate this problem, which leverages collected expert data to aid online learning. Prior works often assume that the learning agent and the expert aim to accomplish the same task, which requires collecting new data for every new task. In this paper, we consider the case where the target task is mismatched from but similar with that of the expert. Such setting can be challenging and we found existing LfD methods can not effectively guide learning in mismatched new tasks with sparse rewards. We propose conservative reward shaping from demonstration (CRSfD), which shapes the sparse rewards using estimated expert value function. To accelerate learning processes, CRSfD guides the agent to conservatively explore around demonstrations. Experimental results of robot manipulation tasks show that our approach outperforms baseline LfD methods when transferring demonstrations collected in a single task to other different but similar tasks.

The main challenge for fine-grained few-shot image classification is to learn feature representations with higher inter-class and lower intra-class variations, with a mere few labelled samples. Conventional few-shot learning methods however cannot be naively adopted for this fine-grained setting -- a quick pilot study reveals that they in fact push for the opposite (i.e., lower inter-class variations and higher intra-class variations). To alleviate this problem, prior works predominately use a support set to reconstruct the query image and then utilize metric learning to determine its category. Upon careful inspection, we further reveal that such unidirectional reconstruction methods only help to increase inter-class variations and are not effective in tackling intra-class variations. In this paper, we for the first time introduce a bi-reconstruction mechanism that can simultaneously accommodate for inter-class and intra-class variations. In addition to using the support set to reconstruct the query set for increasing inter-class variations, we further use the query set to reconstruct the support set for reducing intra-class variations. This design effectively helps the model to explore more subtle and discriminative features which is key for the fine-grained problem in hand. Furthermore, we also construct a self-reconstruction module to work alongside the bi-directional module to make the features even more discriminative. Experimental results on three widely used fine-grained image classification datasets consistently show considerable improvements compared with other methods. Codes are available at: https://github.com/PRIS-CV/Bi-FRN.